Variant report

Variant	rs11918400
Chromosome Location	chr3:140819229-140819230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140817959..140820371-chr3:140821169..140823937,2	K562	blood:
2	chr3:140816971..140819613-chr3:140822850..140824355,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11927534	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12107162	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1426972	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3940907	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683394	0.84[ASW][hapmap];0.90[YRI][hapmap]
rs4683395	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683396	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683546	0.82[CHD][hapmap];0.80[JPT][hapmap]
rs4683547	0.80[JPT][hapmap]
rs4683559	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7430058	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7636278	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7645147	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11918400	RBP2	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140810800-140823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:140814200-140821600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:140814200-140821800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:140814800-140827400	Weak transcription	Right Atrium	heart
5	chr3:140815000-140821800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140815000-140828200	Weak transcription	Psoas Muscle	Psoas
7	chr3:140815400-140819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:140815600-140822000	Weak transcription	Brain Germinal Matrix	brain
9	chr3:140816000-140820200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:140816200-140822200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:140816600-140820000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:140816600-140821600	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:140817000-140827000	Weak transcription	Left Ventricle	heart
14	chr3:140818200-140819600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:140818600-140819800	Enhancers	Pancreas	Pancrea
16	chr3:140818600-140820000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:140818800-140819600	Strong transcription	Dnd41	blood
18	chr3:140819000-140820400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr3:140819200-140820200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:140819200-140821400	Weak transcription	Fetal Heart	heart

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