Variant report

Variant	rs4683395
Chromosome Location	chr3:140849754-140849755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11918400	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11927534	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12107162	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426972	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3940907	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683392	0.83[ASN][1000 genomes]
rs4683393	0.83[ASN][1000 genomes]
rs4683394	0.89[ASW][hapmap];0.91[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs4683396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683546	0.85[JPT][hapmap]
rs4683547	0.85[JPT][hapmap]
rs4683559	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62283600	0.88[AFR][1000 genomes]
rs7430058	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636278	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645147	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4683395	RBP2	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140845000-140850000	Enhancers	Fetal Muscle Leg	muscle
2	chr3:140846200-140851800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:140846400-140862000	Weak transcription	Fetal Heart	heart
4	chr3:140847200-140869000	Weak transcription	Right Ventricle	heart
5	chr3:140847400-140850400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:140847800-140849800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:140848400-140850000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:140848600-140859600	Weak transcription	Dnd41	blood
9	chr3:140849000-140860600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:140849200-140854000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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