Variant report

Variant	rs4683559
Chromosome Location	chr3:140830145-140830146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11918400	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11927534	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107162	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3940907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683392	0.83[ASN][1000 genomes]
rs4683393	0.83[ASN][1000 genomes]
rs4683394	0.90[YRI][hapmap]
rs4683395	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683396	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683546	0.85[JPT][hapmap]
rs4683547	0.85[JPT][hapmap]
rs7430058	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636278	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645147	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823600-140830400	Weak transcription	Fetal Stomach	stomach
2	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:140824400-140833800	Weak transcription	Placenta	Placenta
4	chr3:140824600-140831600	Weak transcription	Fetal Lung	lung
5	chr3:140827400-140832400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140827600-140832400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:140828000-140830200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:140828200-140835000	Weak transcription	Fetal Kidney	kidney
9	chr3:140828400-140833200	Weak transcription	Pancreas	Pancrea
10	chr3:140828400-140833200	Weak transcription	Right Atrium	heart
11	chr3:140828600-140833800	Weak transcription	Right Ventricle	heart
12	chr3:140829000-140833200	Weak transcription	Left Ventricle	heart
13	chr3:140829000-140835000	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:140829400-140833800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:140829400-140841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:140829600-140831000	Enhancers	Fetal Heart	heart
17	chr3:140829600-140831200	Enhancers	Dnd41	blood
18	chr3:140829600-140832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:140829600-140832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:140829600-140836200	Enhancers	Fetal Muscle Leg	muscle
21	chr3:140829800-140830800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:140829800-140833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:140829800-140833400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:140829800-140835000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:140830000-140830800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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