Variant report

Variant	rs7645147
Chromosome Location	chr3:140841424-140841425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11918400	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11927534	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107162	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3940907	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683392	0.83[ASN][1000 genomes]
rs4683393	0.83[ASN][1000 genomes]
rs4683395	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683396	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683546	0.85[JPT][hapmap]
rs4683547	0.82[JPT][hapmap]
rs4683559	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430058	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636278	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140832400-140845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:140834200-140842400	Weak transcription	Right Ventricle	heart
4	chr3:140835400-140841600	Weak transcription	Right Atrium	heart
5	chr3:140840000-140841800	Enhancers	Dnd41	blood
6	chr3:140840400-140841600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:140840400-140842600	Enhancers	Fetal Heart	heart
8	chr3:140841000-140841800	Enhancers	Fetal Thymus	thymus
9	chr3:140841200-140841600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:140841200-140841600	Enhancers	Fetal Stomach	stomach
11	chr3:140841200-140841800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:140841200-140842000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:140841400-140841600	Enhancers	Fetal Muscle Leg	muscle
14	chr3:140841400-140841800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:140841400-140841800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:140841400-140841800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:140841400-140841800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:140841400-140841800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:140841400-140843800	Enhancers	Left Ventricle	heart
20	chr3:140841400-140846600	Enhancers	Pancreas	Pancrea

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