Variant report

Variant	rs59895438
Chromosome Location	chr7:27596180-27596181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28361579	1.00[AMR][1000 genomes]
rs73686419	1.00[AMR][1000 genomes]
rs73686420	1.00[AMR][1000 genomes]
rs73686421	1.00[AMR][1000 genomes]
rs73686425	1.00[AMR][1000 genomes]
rs73686429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73686443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3324575	chr7:27595749-27597032	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27569600-27602200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
4	chr7:27581400-27600200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:27581600-27600200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:27581600-27602800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:27581800-27603000	Weak transcription	Fetal Lung	lung
9	chr7:27582200-27603000	Weak transcription	Primary T cells from cord blood	blood
10	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
11	chr7:27582800-27600200	Weak transcription	NHDF-Ad	bronchial
12	chr7:27582800-27604800	Weak transcription	Fetal Kidney	kidney
13	chr7:27582800-27615000	Weak transcription	Placenta	Placenta
14	chr7:27582800-27615200	Weak transcription	Ovary	ovary
15	chr7:27583200-27598800	Weak transcription	Fetal Intestine Large	intestine
16	chr7:27587400-27602600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:27587800-27600200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:27587800-27602600	Weak transcription	HSMM	muscle
19	chr7:27588600-27596400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:27593200-27600400	Weak transcription	Liver	Liver
21	chr7:27593400-27597600	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:27595600-27600200	Weak transcription	HMEC	breast
23	chr7:27595600-27600400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:27595800-27603000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:27596000-27602600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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