Variant report

Variant	rs73686437
Chromosome Location	chr7:27601041-27601042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10227485	1.00[EUR][1000 genomes]
rs10228635	1.00[EUR][1000 genomes]
rs10231626	1.00[EUR][1000 genomes]
rs28361579	1.00[AMR][1000 genomes]
rs4083147	1.00[EUR][1000 genomes]
rs55877469	1.00[EUR][1000 genomes]
rs57437032	1.00[EUR][1000 genomes]
rs59063443	1.00[EUR][1000 genomes]
rs59895438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822008	1.00[EUR][1000 genomes]
rs6651068	1.00[EUR][1000 genomes]
rs6952692	1.00[EUR][1000 genomes]
rs6952874	1.00[EUR][1000 genomes]
rs6980308	1.00[EUR][1000 genomes]
rs73285195	1.00[EUR][1000 genomes]
rs73684007	1.00[EUR][1000 genomes]
rs73684011	1.00[EUR][1000 genomes]
rs73684021	1.00[EUR][1000 genomes]
rs73684024	1.00[EUR][1000 genomes]
rs73686416	1.00[EUR][1000 genomes]
rs73686417	1.00[EUR][1000 genomes]
rs73686419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686430	1.00[EUR][1000 genomes]
rs73686443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686444	1.00[EUR][1000 genomes]
rs73686445	1.00[EUR][1000 genomes]
rs73686447	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27569600-27602200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
4	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:27581600-27602800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:27581800-27603000	Weak transcription	Fetal Lung	lung
7	chr7:27582200-27603000	Weak transcription	Primary T cells from cord blood	blood
8	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
9	chr7:27582800-27604800	Weak transcription	Fetal Kidney	kidney
10	chr7:27582800-27615000	Weak transcription	Placenta	Placenta
11	chr7:27582800-27615200	Weak transcription	Ovary	ovary
12	chr7:27587400-27602600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:27587800-27602600	Weak transcription	HSMM	muscle
14	chr7:27595800-27603000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:27596000-27602600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:27600200-27601200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:27600200-27601200	Enhancers	Osteobl	bone
18	chr7:27600200-27601400	Enhancers	NHDF-Ad	bronchial
19	chr7:27600200-27601600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:27600400-27601200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:27600400-27601200	Enhancers	HSMMtube	muscle
22	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:27601000-27603200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links