Variant report
| Variant | rs10227485 |
|---|---|
| Chromosome Location | chr7:27547620-27547621 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10228635 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10231626 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4083147 | 1.00[EUR][1000 genomes] |
| rs55877469 | 1.00[EUR][1000 genomes] |
| rs56704497 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs57437032 | 1.00[EUR][1000 genomes] |
| rs59063443 | 1.00[EUR][1000 genomes] |
| rs60822008 | 1.00[EUR][1000 genomes] |
| rs6651068 | 1.00[EUR][1000 genomes] |
| rs6952692 | 1.00[EUR][1000 genomes] |
| rs6952874 | 1.00[EUR][1000 genomes] |
| rs6980308 | 1.00[EUR][1000 genomes] |
| rs73285195 | 1.00[EUR][1000 genomes] |
| rs73684007 | 1.00[EUR][1000 genomes] |
| rs73684011 | 1.00[EUR][1000 genomes] |
| rs73684021 | 1.00[EUR][1000 genomes] |
| rs73684024 | 1.00[EUR][1000 genomes] |
| rs73686416 | 1.00[EUR][1000 genomes] |
| rs73686417 | 1.00[EUR][1000 genomes] |
| rs73686419 | 1.00[EUR][1000 genomes] |
| rs73686420 | 1.00[EUR][1000 genomes] |
| rs73686421 | 1.00[EUR][1000 genomes] |
| rs73686425 | 1.00[EUR][1000 genomes] |
| rs73686429 | 1.00[EUR][1000 genomes] |
| rs73686430 | 1.00[EUR][1000 genomes] |
| rs73686437 | 1.00[EUR][1000 genomes] |
| rs73686443 | 1.00[EUR][1000 genomes] |
| rs73686444 | 1.00[EUR][1000 genomes] |
| rs73686445 | 1.00[EUR][1000 genomes] |
| rs73686447 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27539400-27558000 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr7:27541000-27548800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
