Variant report

Variant	rs73686416
Chromosome Location	chr7:27557424-27557425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10227485	1.00[EUR][1000 genomes]
rs10228635	1.00[EUR][1000 genomes]
rs10231626	1.00[EUR][1000 genomes]
rs4083147	1.00[EUR][1000 genomes]
rs55877469	1.00[EUR][1000 genomes]
rs57437032	1.00[EUR][1000 genomes]
rs59063443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60822008	1.00[EUR][1000 genomes]
rs6651068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6952692	1.00[EUR][1000 genomes]
rs6952874	1.00[EUR][1000 genomes]
rs6980308	1.00[EUR][1000 genomes]
rs73285195	1.00[EUR][1000 genomes]
rs73684007	1.00[EUR][1000 genomes]
rs73684011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684021	1.00[EUR][1000 genomes]
rs73684024	1.00[EUR][1000 genomes]
rs73686417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686418	1.00[AMR][1000 genomes]
rs73686419	1.00[EUR][1000 genomes]
rs73686420	1.00[EUR][1000 genomes]
rs73686421	1.00[EUR][1000 genomes]
rs73686425	1.00[EUR][1000 genomes]
rs73686429	1.00[EUR][1000 genomes]
rs73686430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686437	1.00[EUR][1000 genomes]
rs73686443	1.00[EUR][1000 genomes]
rs73686444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
2	chr7:27549200-27561200	Weak transcription	Liver	Liver
3	chr7:27550600-27563400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:27551200-27563800	Weak transcription	Left Ventricle	heart
5	chr7:27551600-27563800	Weak transcription	Placenta	Placenta
6	chr7:27552600-27564800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:27552600-27568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:27553000-27563600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:27553200-27581000	Weak transcription	Fetal Heart	heart
10	chr7:27553600-27564000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:27553800-27564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:27554400-27564000	Weak transcription	K562	blood
13	chr7:27554800-27558000	Weak transcription	HepG2	liver
14	chr7:27554800-27558200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:27555000-27568600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:27555800-27581000	Weak transcription	Gastric	stomach
17	chr7:27556000-27562800	Weak transcription	Aorta	Aorta
18	chr7:27556000-27563800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:27556000-27579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:27556000-27581600	Weak transcription	HMEC	breast
21	chr7:27556200-27557600	Weak transcription	Fetal Lung	lung
22	chr7:27556200-27564000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:27556400-27564400	Weak transcription	Brain Substantia Nigra	brain
24	chr7:27556400-27584400	Weak transcription	NHEK	skin
25	chr7:27556400-27586400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:27556600-27558000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:27556600-27558800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:27556600-27559400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:27556600-27563800	Weak transcription	Fetal Kidney	kidney
30	chr7:27556600-27563800	Weak transcription	Dnd41	blood
31	chr7:27556600-27568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:27556600-27569000	Weak transcription	NHDF-Ad	bronchial
33	chr7:27556800-27568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:27557000-27558200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:27557000-27564200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:27557200-27573400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr7:27557400-27560600	Weak transcription	Primary T cells from cord blood	blood

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