Variant report

Variant	rs57437032
Chromosome Location	chr7:27717078-27717079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27716154..27718017-chr7:27726881..27729389,2	K562	blood:
2	chr7:27702507..27704104-chr7:27716962..27719221,3	K562	blood:
3	chr7:27701170..27703848-chr7:27715195..27717641,2	MCF-7	breast:
4	chr7:27711761..27713688-chr7:27715635..27717751,2	K562	blood:
5	chr7:27702060..27704104-chr7:27716962..27718594,2	K562	blood:
6	chr7:27716474..27720411-chr7:27722310..27724514,4	K562	blood:
7	chr7:27716638..27718426-chr7:27834376..27836195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10227485	1.00[EUR][1000 genomes]
rs10228635	1.00[EUR][1000 genomes]
rs10231626	1.00[EUR][1000 genomes]
rs55877469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59063443	1.00[EUR][1000 genomes]
rs60822008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651068	1.00[EUR][1000 genomes]
rs6952692	1.00[EUR][1000 genomes]
rs6952874	1.00[EUR][1000 genomes]
rs6980308	1.00[EUR][1000 genomes]
rs73285195	1.00[EUR][1000 genomes]
rs73684007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684011	1.00[EUR][1000 genomes]
rs73684021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686416	1.00[EUR][1000 genomes]
rs73686417	1.00[EUR][1000 genomes]
rs73686419	1.00[EUR][1000 genomes]
rs73686420	1.00[EUR][1000 genomes]
rs73686421	1.00[EUR][1000 genomes]
rs73686425	1.00[EUR][1000 genomes]
rs73686429	1.00[EUR][1000 genomes]
rs73686430	1.00[EUR][1000 genomes]
rs73686437	1.00[EUR][1000 genomes]
rs73686443	1.00[EUR][1000 genomes]
rs73686444	1.00[EUR][1000 genomes]
rs73686445	1.00[EUR][1000 genomes]
rs73686447	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27715800-27719000	Enhancers	Fetal Intestine Large	intestine
2	chr7:27716000-27719200	Enhancers	Fetal Intestine Small	intestine
3	chr7:27716200-27717200	Enhancers	NHDF-Ad	bronchial
4	chr7:27716200-27719600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:27716400-27720800	Enhancers	HepG2	liver
6	chr7:27716800-27717200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:27716800-27717200	Enhancers	NH-A	brain
8	chr7:27716800-27717200	Enhancers	NHEK	skin
9	chr7:27716800-27717400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:27716800-27717600	Enhancers	Hela-S3	cervix
11	chr7:27716800-27719000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:27716800-27719200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:27716800-27719200	Enhancers	Placenta	Placenta
14	chr7:27716800-27719200	Enhancers	HSMM	muscle
15	chr7:27716800-27719800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:27716800-27720000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:27716800-27720000	Enhancers	HMEC	breast
18	chr7:27716800-27720800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:27717000-27717200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:27717000-27717600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:27717000-27717600	Enhancers	K562	blood
22	chr7:27717000-27718000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:27717000-27718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:27717000-27718200	Flanking Active TSS	A549	lung
25	chr7:27717000-27718400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:27717000-27719000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr7:27717000-27719200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:27717000-27719200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr7:27717000-27719200	Enhancers	Stomach Mucosa	stomach
30	chr7:27717000-27719200	Enhancers	HSMMtube	muscle
31	chr7:27717000-27719200	Enhancers	Osteobl	bone
32	chr7:27717000-27719600	Enhancers	HUVEC	blood vessel

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