Variant report

Variant	rs73686429
Chromosome Location	chr7:27573916-27573917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27572850..27575032-chr7:27915614..27917476,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10227485	1.00[EUR][1000 genomes]
rs10228635	1.00[EUR][1000 genomes]
rs10231626	1.00[EUR][1000 genomes]
rs28361579	1.00[AMR][1000 genomes]
rs4083147	1.00[EUR][1000 genomes]
rs55877469	1.00[EUR][1000 genomes]
rs57437032	1.00[EUR][1000 genomes]
rs59063443	1.00[EUR][1000 genomes]
rs59895438	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822008	1.00[EUR][1000 genomes]
rs6651068	1.00[EUR][1000 genomes]
rs6952692	1.00[EUR][1000 genomes]
rs6952874	1.00[EUR][1000 genomes]
rs6980308	1.00[EUR][1000 genomes]
rs73285195	1.00[EUR][1000 genomes]
rs73684007	1.00[EUR][1000 genomes]
rs73684011	1.00[EUR][1000 genomes]
rs73684021	1.00[EUR][1000 genomes]
rs73684024	1.00[EUR][1000 genomes]
rs73686416	1.00[EUR][1000 genomes]
rs73686417	1.00[EUR][1000 genomes]
rs73686419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686425	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686430	1.00[EUR][1000 genomes]
rs73686437	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686444	1.00[EUR][1000 genomes]
rs73686445	1.00[EUR][1000 genomes]
rs73686447	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27553200-27581000	Weak transcription	Fetal Heart	heart
2	chr7:27555800-27581000	Weak transcription	Gastric	stomach
3	chr7:27556000-27579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:27556000-27581600	Weak transcription	HMEC	breast
5	chr7:27556400-27584400	Weak transcription	NHEK	skin
6	chr7:27556400-27586400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:27558000-27579800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:27559400-27584200	Weak transcription	Pancreas	Pancrea
9	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
10	chr7:27559800-27593000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:27560800-27578800	Weak transcription	NHLF	lung
12	chr7:27561200-27580200	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:27561200-27580600	Strong transcription	Liver	Liver
14	chr7:27561600-27583000	Weak transcription	Colonic Mucosa	Colon
15	chr7:27561800-27580200	Weak transcription	Fetal Stomach	stomach
16	chr7:27562400-27579800	Weak transcription	NH-A	brain
17	chr7:27562400-27581000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:27562400-27581000	Weak transcription	Spleen	Spleen
19	chr7:27563000-27580000	Weak transcription	Fetal Thymus	thymus
20	chr7:27563000-27581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:27563200-27579800	Weak transcription	Brain Angular Gyrus	brain
22	chr7:27563400-27580800	Weak transcription	GM12878-XiMat	blood
23	chr7:27563400-27581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:27564000-27580800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:27564200-27582000	Weak transcription	Stomach Mucosa	stomach
26	chr7:27564200-27585400	Weak transcription	Small Intestine	intestine
27	chr7:27565200-27581600	Weak transcription	Esophagus	oesophagus
28	chr7:27565600-27592200	Weak transcription	Brain Substantia Nigra	brain
29	chr7:27565800-27575800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:27566000-27579800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:27566000-27580000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:27566000-27580000	Weak transcription	Thymus	Thymus
33	chr7:27566000-27580200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:27566000-27580600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:27566000-27581000	Weak transcription	Brain Anterior Caudate	brain
36	chr7:27566000-27583800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr7:27566200-27579800	Weak transcription	Hela-S3	cervix
38	chr7:27566200-27580000	Weak transcription	K562	blood
39	chr7:27566400-27579600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr7:27566600-27578200	Weak transcription	Primary B cells from cord blood	blood
41	chr7:27566800-27579800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr7:27566800-27593200	Weak transcription	Lung	lung
43	chr7:27567000-27580000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:27567200-27582800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr7:27569000-27579800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:27569000-27579800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:27569000-27579800	Weak transcription	Osteobl	bone
48	chr7:27569000-27580200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr7:27569200-27579600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:27569400-27578000	Weak transcription	Brain Hippocampus Middle	brain

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