Variant report

Variant	rs73686444
Chromosome Location	chr7:27616420-27616421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27274639..27275647-chr7:27615690..27616535,7	MCF-7	breast:
2	chr7:27275235..27276066-chr7:27615695..27616444,2	MCF-7	breast:
3	chr7:27235919..27236503-chr7:27615711..27616568,3	K562	blood:
4	chr7:27249674..27250599-chr7:27615679..27616498,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10227485	1.00[EUR][1000 genomes]
rs10228635	1.00[EUR][1000 genomes]
rs10231626	1.00[EUR][1000 genomes]
rs4083147	1.00[EUR][1000 genomes]
rs55877469	1.00[EUR][1000 genomes]
rs57437032	1.00[EUR][1000 genomes]
rs59063443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60822008	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6651068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6952692	1.00[EUR][1000 genomes]
rs6952874	1.00[EUR][1000 genomes]
rs6980308	1.00[EUR][1000 genomes]
rs73285195	1.00[EUR][1000 genomes]
rs73684007	1.00[EUR][1000 genomes]
rs73684011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684021	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684024	1.00[EUR][1000 genomes]
rs73686416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686418	1.00[AMR][1000 genomes]
rs73686419	1.00[EUR][1000 genomes]
rs73686420	1.00[EUR][1000 genomes]
rs73686421	1.00[EUR][1000 genomes]
rs73686425	1.00[EUR][1000 genomes]
rs73686429	1.00[EUR][1000 genomes]
rs73686430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686437	1.00[EUR][1000 genomes]
rs73686443	1.00[EUR][1000 genomes]
rs73686445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73686447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
4	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:27603000-27626400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:27603200-27631800	Weak transcription	Primary T cells from cord blood	blood
7	chr7:27603600-27626400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:27605200-27617200	Weak transcription	Fetal Intestine Small	intestine
9	chr7:27605200-27624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:27605800-27645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:27609400-27632600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:27609400-27651000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:27610000-27619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:27610200-27617800	Weak transcription	Primary B cells from cord blood	blood
15	chr7:27614600-27617400	Weak transcription	HepG2	liver
16	chr7:27615200-27619000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:27615600-27621800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:27615600-27626400	Weak transcription	Ovary	ovary
19	chr7:27615600-27626400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:27615600-27657800	Weak transcription	Aorta	Aorta
21	chr7:27615800-27620600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:27616000-27618200	Weak transcription	Fetal Stomach	stomach
23	chr7:27616000-27620600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:27616000-27626600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:27616000-27631600	Weak transcription	Adipose Nuclei	Adipose
26	chr7:27616000-27632800	Weak transcription	HUVEC	blood vessel
27	chr7:27616000-27643400	Weak transcription	Fetal Lung	lung
28	chr7:27616000-27650800	Weak transcription	Fetal Kidney	kidney
29	chr7:27616200-27617200	Weak transcription	Liver	Liver

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