Variant report

Variant	rs59900079
Chromosome Location	chr10:52396444-52396445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52154324..52156059-chr10:52394056..52396919,2	K562	blood:
2	chr10:52395757..52398409-chr10:52400415..52402035,2	MCF-7	breast:
3	chr10:52394806..52397022-chr10:52398491..52400637,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASAH2B-2	chr10:52389337-52401211	ENSG00000226200.2

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10670074	1.00[AMR][1000 genomes]
rs16907261	0.83[AFR][1000 genomes]
rs56354320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56704571	1.00[AMR][1000 genomes]
rs57717008	1.00[AMR][1000 genomes]
rs57871603	0.83[AFR][1000 genomes]
rs58675275	1.00[AMR][1000 genomes]
rs60501983	1.00[AMR][1000 genomes]
rs73316698	1.00[AMR][1000 genomes]
rs73318732	1.00[AMR][1000 genomes]
rs73318739	1.00[AMR][1000 genomes]
rs73318755	1.00[AMR][1000 genomes]
rs73320871	1.00[AMR][1000 genomes]
rs73320873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320893	0.83[AFR][1000 genomes]
rs73320894	1.00[AMR][1000 genomes]
rs73320899	0.87[AFR][1000 genomes]
rs73332914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52385800-52396800	Weak transcription	Fetal Brain Male	brain
2	chr10:52385800-52397000	Weak transcription	Psoas Muscle	Psoas
3	chr10:52385800-52397000	Weak transcription	Small Intestine	intestine
4	chr10:52386000-52397000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:52386000-52400400	Weak transcription	Fetal Lung	lung
6	chr10:52390200-52397000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:52390200-52397000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:52390800-52396600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:52394600-52397000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:52394600-52397000	Enhancers	Osteobl	bone
11	chr10:52394600-52397200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:52394600-52397400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:52394800-52396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:52394800-52397200	Enhancers	NH-A	brain
15	chr10:52394800-52397400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:52395000-52396600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:52395400-52396600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:52395400-52396600	Weak transcription	NHDF-Ad	bronchial
19	chr10:52395400-52396800	Enhancers	HUVEC	blood vessel
20	chr10:52395600-52397000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:52395600-52397600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:52395800-52396800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:52395800-52396800	Weak transcription	HSMM	muscle
24	chr10:52395800-52397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:52395800-52397200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:52396000-52397200	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:52396000-52397200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr10:52396000-52397200	Enhancers	K562	blood
29	chr10:52396000-52397400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:52396000-52397400	Enhancers	Fetal Thymus	thymus
31	chr10:52396200-52396800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr10:52396200-52396800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:52396200-52396800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr10:52396200-52396800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr10:52396200-52396800	Enhancers	HepG2	liver
36	chr10:52396200-52397000	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr10:52396200-52397200	Enhancers	Primary B cells from cord blood	blood
38	chr10:52396200-52397200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr10:52396200-52397200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr10:52396200-52397200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr10:52396400-52396600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:52396400-52396600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:52396400-52396600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:52396400-52396800	Weak transcription	NHLF	lung
45	chr10:52396400-52397200	Flanking Active TSS	GM12878-XiMat	blood

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