Variant report

Variant	rs73318732
Chromosome Location	chr10:52304043-52304044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52303296..52304994-chr10:52312451..52315128,2	MCF-7	breast:
2	chr10:52303071..52304706-chr10:52310411..52312427,2	K562	blood:
3	chr10:52291845..52294288-chr10:52302987..52304879,2	K562	blood:
4	chr10:52291845..52294615-chr10:52303379..52304888,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10670074	1.00[AMR][1000 genomes]
rs11006152	1.00[EUR][1000 genomes]
rs11814231	1.00[EUR][1000 genomes]
rs16934269	1.00[EUR][1000 genomes]
rs16934373	1.00[EUR][1000 genomes]
rs41417550	1.00[EUR][1000 genomes]
rs56354320	1.00[AMR][1000 genomes]
rs56704571	1.00[AMR][1000 genomes]
rs57717008	1.00[AMR][1000 genomes]
rs58675275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59273165	1.00[EUR][1000 genomes]
rs59900079	1.00[AMR][1000 genomes]
rs60501983	1.00[AMR][1000 genomes]
rs60757498	1.00[EUR][1000 genomes]
rs7100732	1.00[EUR][1000 genomes]
rs73316698	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318725	1.00[EUR][1000 genomes]
rs73318727	1.00[EUR][1000 genomes]
rs73318734	1.00[EUR][1000 genomes]
rs73318739	1.00[AMR][1000 genomes]
rs73318745	1.00[EUR][1000 genomes]
rs73318755	1.00[AMR][1000 genomes]
rs73320871	1.00[AMR][1000 genomes]
rs73320873	1.00[AMR][1000 genomes]
rs73320894	1.00[AMR][1000 genomes]
rs73330938	1.00[AMR][1000 genomes]
rs73330964	1.00[AMR][1000 genomes]
rs73330981	1.00[AMR][1000 genomes]
rs73330986	1.00[AMR][1000 genomes]
rs73331000	1.00[AMR][1000 genomes]
rs73332914	1.00[AMR][1000 genomes]
rs74131296	1.00[EUR][1000 genomes]
rs7900063	1.00[EUR][1000 genomes]
rs7921654	1.00[EUR][1000 genomes]
rs7922659	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:52296800-52306000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:52297000-52304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:52297000-52304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:52297400-52306000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr10:52299000-52304400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:52299000-52305400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:52299000-52305400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:52299000-52310200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:52299200-52304600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:52299200-52305800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:52299200-52310200	Weak transcription	Pancreas	Pancrea
13	chr10:52299600-52320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:52300200-52305000	Weak transcription	HepG2	liver
15	chr10:52300600-52310200	Weak transcription	Placenta	Placenta
16	chr10:52300800-52304600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:52300800-52304800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:52300800-52310800	Weak transcription	Gastric	stomach
19	chr10:52300800-52322800	Weak transcription	Primary B cells from cord blood	blood
20	chr10:52301400-52304800	Weak transcription	Psoas Muscle	Psoas
21	chr10:52301400-52306000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:52301400-52308600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:52301600-52304200	Enhancers	Brain Anterior Caudate	brain
24	chr10:52301600-52304400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:52301600-52306000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:52301600-52309200	Weak transcription	Ovary	ovary
27	chr10:52301600-52310200	Weak transcription	Left Ventricle	heart
28	chr10:52301600-52327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:52302400-52306000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:52302600-52305000	Enhancers	Brain Substantia Nigra	brain
31	chr10:52302600-52305200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:52302600-52306000	Enhancers	Primary T cells from cord blood	blood
33	chr10:52302800-52304200	Genic enhancers	K562	blood
34	chr10:52302800-52304400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr10:52302800-52304800	Enhancers	Small Intestine	intestine
36	chr10:52302800-52306000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:52303000-52304400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:52303000-52304400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:52303000-52304600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:52303000-52305000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:52303000-52305200	Enhancers	GM12878-XiMat	blood
42	chr10:52303200-52304200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:52303200-52310200	Weak transcription	Fetal Lung	lung
44	chr10:52303200-52310200	Weak transcription	Stomach Mucosa	stomach
45	chr10:52303200-52312200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:52303400-52304400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:52303400-52304400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:52303400-52304400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr10:52303400-52304600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:52303400-52304800	Weak transcription	Primary B cells from peripheral blood	blood

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