Variant report

Variant	rs73320873
Chromosome Location	chr10:52386461-52386462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52372893..52376676-chr10:52385065..52387133,3	K562	blood:
2	chr10:52342227..52348125-chr10:52381237..52386507,8	K562	blood:
3	chr10:52385766..52387938-chr10:52404777..52406730,2	K562	blood:
4	chr10:52381243..52386496-chr10:52418227..52421959,6	MCF-7	breast:
5	chr10:52382538..52386733-chr10:52497918..52501112,4	MCF-7	breast:
6	chr10:52358660..52367648-chr10:52378481..52386533,25	MCF-7	breast:
7	chr10:52103151..52105270-chr10:52383748..52386662,2	K562	blood:
8	chr10:52336198..52337725-chr10:52386422..52388764,2	K562	blood:
9	chr10:52173619..52179913-chr10:52381938..52386991,6	K562	blood:
10	chr10:52385910..52390098-chr10:52396807..52399699,3	MCF-7	breast:
11	chr10:52385385..52386943-chr10:52417956..52419960,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASAH2B-2	chr10:52383739-52386623	NONHSAT013388
2	lnc-ASAH2B-2	chr10:52386430-52386565	ENSG00000226200.2
3	lnc-ASAH2B-2	chr10:52386410-52386565	ENSG00000226200.2

No data

Variant related genes	Relation type
ENSG00000251950	Chromatin interaction
ENSG00000231345	Chromatin interaction
ENSG00000230036	Chromatin interaction
ENSG00000198964	Chromatin interaction
ENSG00000204147	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10670074	1.00[AMR][1000 genomes]
rs56354320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56704571	1.00[AMR][1000 genomes]
rs57717008	1.00[AMR][1000 genomes]
rs58675275	1.00[AMR][1000 genomes]
rs59900079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60501983	1.00[AMR][1000 genomes]
rs73316698	1.00[AMR][1000 genomes]
rs73318732	1.00[AMR][1000 genomes]
rs73318739	1.00[AMR][1000 genomes]
rs73318755	1.00[AMR][1000 genomes]
rs73320871	1.00[AMR][1000 genomes]
rs73320894	1.00[AMR][1000 genomes]
rs73320899	0.83[AFR][1000 genomes]
rs73332914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52385400-52392400	Weak transcription	Lung	lung
2	chr10:52385600-52389200	Weak transcription	Ovary	ovary
3	chr10:52385600-52392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:52385600-52392200	Weak transcription	Left Ventricle	heart
5	chr10:52385600-52392400	Weak transcription	Gastric	stomach
6	chr10:52385600-52393000	Weak transcription	Pancreas	Pancrea
7	chr10:52385600-52393600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:52385600-52395200	Weak transcription	Esophagus	oesophagus
9	chr10:52385800-52387000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:52385800-52387000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:52385800-52387200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:52385800-52387600	Weak transcription	Placenta	Placenta
13	chr10:52385800-52388400	Weak transcription	Adipose Nuclei	Adipose
14	chr10:52385800-52388400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:52385800-52388400	Weak transcription	Right Ventricle	heart
16	chr10:52385800-52389200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:52385800-52389400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:52385800-52389400	Weak transcription	Brain Anterior Caudate	brain
19	chr10:52385800-52389400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:52385800-52391000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:52385800-52391600	Weak transcription	Brain Angular Gyrus	brain
22	chr10:52385800-52392800	Weak transcription	Aorta	Aorta
23	chr10:52385800-52394800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:52385800-52395000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:52385800-52396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:52385800-52396800	Weak transcription	Fetal Brain Male	brain
27	chr10:52385800-52397000	Weak transcription	Psoas Muscle	Psoas
28	chr10:52385800-52397000	Weak transcription	Small Intestine	intestine
29	chr10:52386000-52386800	Enhancers	HepG2	liver
30	chr10:52386000-52387000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:52386000-52387000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:52386000-52387000	Weak transcription	Liver	Liver
33	chr10:52386000-52387200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:52386000-52387200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:52386000-52388000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:52386000-52388200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:52386000-52388200	Weak transcription	Brain Germinal Matrix	brain
38	chr10:52386000-52388400	Weak transcription	Brain Substantia Nigra	brain
39	chr10:52386000-52388600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:52386000-52388600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:52386000-52389000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:52386000-52389200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:52386000-52389200	Weak transcription	GM12878-XiMat	blood
44	chr10:52386000-52389400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:52386000-52389400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:52386000-52389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:52386000-52389400	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:52386000-52389600	Weak transcription	Fetal Intestine Large	intestine
49	chr10:52386000-52390000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:52386000-52390200	Weak transcription	NHEK	skin

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