Variant report

Variant	rs5994420
Chromosome Location	chr22:32070751-32070752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32056382..32058411-chr22:32067982..32070829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10154390	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12165432	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12171042	0.89[YRI][hapmap]
rs131225	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs131233	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs131244	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs131245	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs131250	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs131253	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs138289	0.80[YRI][hapmap]
rs140078	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs140081	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2006771	0.86[YRI][hapmap]
rs2108108	0.94[CHB][hapmap]
rs28528942	0.82[ASN][1000 genomes]
rs3804087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5753686	0.80[YRI][hapmap]
rs5994419	0.91[AFR][1000 genomes]
rs5994427	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs5994431	0.94[CHB][hapmap]
rs5998069	0.89[YRI][hapmap]
rs5998072	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998136	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7287937	0.89[YRI][hapmap]
rs7289075	0.87[YRI][hapmap]
rs7291918	0.86[YRI][hapmap]
rs760908	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs761746	0.89[YRI][hapmap]
rs8141214	0.94[CHB][hapmap]
rs9621327	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9956	0.86[YRI][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32058800-32072400	Weak transcription	Fetal Heart	heart
2	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr22:32067000-32072400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:32067000-32072600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr22:32067400-32078800	Weak transcription	HepG2	liver
7	chr22:32067600-32072400	Weak transcription	Placenta	Placenta
8	chr22:32067800-32072400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
10	chr22:32069200-32071200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr22:32069400-32071000	Enhancers	Primary B cells from peripheral blood	blood
12	chr22:32070000-32070800	Enhancers	Primary B cells from cord blood	blood
13	chr22:32070000-32071000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr22:32070600-32070800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr22:32070600-32070800	Enhancers	GM12878-XiMat	blood

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