Variant report

Variant	rs9621327
Chromosome Location	chr22:32136966-32136967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32128598-32137554..22:32764253-32784733	K562	blood:
2	chr22:32135750..32139331-chr22:32143515..32147330,3	K562	blood:
3	chr22:32134066..32139583-chr22:32142128..32146951,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205853	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000183530	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11089527	0.84[EUR][1000 genomes]
rs12165432	0.90[ASN][1000 genomes]
rs131225	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs131233	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs131244	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs131245	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs131250	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs131253	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs140078	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs140081	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2108108	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28528942	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3804087	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5994420	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5994427	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5994431	0.86[EUR][1000 genomes]
rs5998072	0.87[ASN][1000 genomes]
rs5998086	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5998119	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5998121	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998122	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5998126	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs5998131	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs5998136	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62238892	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7290856	0.85[EUR][1000 genomes]
rs760908	0.86[ASN][1000 genomes]
rs8141214	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9619234	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32112200-32142000	Weak transcription	Hela-S3	cervix
2	chr22:32112200-32145000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32113400-32143800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32113600-32142000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:32121000-32144000	Weak transcription	Fetal Kidney	kidney
6	chr22:32121200-32143600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr22:32121200-32143600	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:32121400-32143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr22:32121600-32144000	Weak transcription	Brain Anterior Caudate	brain
10	chr22:32121600-32144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr22:32121600-32144400	Weak transcription	HSMMtube	muscle
12	chr22:32121600-32144600	Weak transcription	Fetal Brain Male	brain
13	chr22:32122000-32140600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr22:32123200-32144600	Weak transcription	Psoas Muscle	Psoas
15	chr22:32123200-32144800	Weak transcription	Right Ventricle	heart
16	chr22:32124200-32144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr22:32124200-32144600	Weak transcription	Spleen	Spleen
18	chr22:32125200-32143400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr22:32125200-32143800	Weak transcription	Brain Substantia Nigra	brain
20	chr22:32125200-32144600	Weak transcription	Brain Angular Gyrus	brain
21	chr22:32128400-32139600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr22:32128400-32140800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:32128600-32141000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr22:32128600-32143600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr22:32128800-32138000	Weak transcription	GM12878-XiMat	blood
26	chr22:32128800-32144200	Weak transcription	Small Intestine	intestine
27	chr22:32129200-32143800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr22:32129200-32145200	Weak transcription	Gastric	stomach
29	chr22:32130600-32143600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr22:32130800-32143200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr22:32130800-32145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr22:32131000-32143800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr22:32131000-32144000	Weak transcription	NHLF	lung
34	chr22:32131800-32143800	Weak transcription	Fetal Heart	heart
35	chr22:32132400-32137000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr22:32132400-32137000	Strong transcription	Fetal Intestine Large	intestine
37	chr22:32132400-32137400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr22:32132400-32139200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr22:32132400-32139200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr22:32132400-32142800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr22:32132400-32143800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr22:32132400-32144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr22:32132600-32143800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr22:32132800-32144800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr22:32133000-32143600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr22:32134000-32139000	Strong transcription	Dnd41	blood
47	chr22:32134600-32143400	Weak transcription	NHDF-Ad	bronchial
48	chr22:32134800-32137000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr22:32134800-32138200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr22:32134800-32139000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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