Variant report

Variant	rs5998131
Chromosome Location	chr22:32192235-32192236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31936958-31958600..22:32188129-32210582	K562	blood:
2	22:32188129-32210582..22:32846948-32860159	K562	blood:
3	chr22:32190250..32192446-chr22:32348724..32351216,2	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000214093	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11089527	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs131244	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs131245	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs131250	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs131253	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2012150	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2108108	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28528942	0.82[EUR][1000 genomes]
rs28574575	0.81[ASN][1000 genomes]
rs5994427	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs5994431	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5994432	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs5998119	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5998121	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998122	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5998126	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5998136	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62238892	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7290856	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8141214	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9619234	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9621327	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:32164600-32196000	Weak transcription	Hela-S3	cervix
6	chr22:32165000-32197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr22:32171200-32195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:32171200-32204200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr22:32175200-32213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr22:32175400-32193400	Weak transcription	HSMMtube	muscle
13	chr22:32175800-32202000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr22:32176000-32192400	Weak transcription	Fetal Kidney	kidney
15	chr22:32176000-32194600	Weak transcription	Fetal Brain Male	brain
16	chr22:32176000-32198600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr22:32176600-32193600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr22:32176800-32193800	Weak transcription	HSMM	muscle
19	chr22:32176800-32196200	Weak transcription	NHLF	lung
20	chr22:32176800-32198800	Weak transcription	A549	lung
21	chr22:32176800-32200000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr22:32177000-32193200	Weak transcription	Esophagus	oesophagus
23	chr22:32177000-32193200	Weak transcription	Right Ventricle	heart
24	chr22:32177000-32193600	Weak transcription	Pancreas	Pancrea
25	chr22:32177000-32194600	Weak transcription	Colonic Mucosa	Colon
26	chr22:32178200-32199600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr22:32178800-32193000	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:32179200-32193600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr22:32179400-32193400	Weak transcription	Gastric	stomach
30	chr22:32179400-32193600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr22:32179400-32193600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr22:32179600-32193200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr22:32179600-32193200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr22:32179600-32193200	Weak transcription	Lung	lung
35	chr22:32179600-32193200	Weak transcription	Thymus	Thymus
36	chr22:32179600-32193200	Weak transcription	Spleen	Spleen
37	chr22:32179600-32193400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr22:32179600-32193400	Weak transcription	Small Intestine	intestine
39	chr22:32179600-32193600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr22:32179600-32193600	Weak transcription	Aorta	Aorta
41	chr22:32179600-32193800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr22:32180000-32193200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr22:32180000-32198600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr22:32180200-32193200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr22:32181400-32193400	Weak transcription	Brain Substantia Nigra	brain
46	chr22:32181800-32194400	Weak transcription	NH-A	brain
47	chr22:32181800-32196200	Weak transcription	HMEC	breast
48	chr22:32181800-32198600	Weak transcription	NHDF-Ad	bronchial
49	chr22:32182000-32192400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr22:32182000-32193200	Weak transcription	Brain Inferior Temporal Lobe	brain

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