Variant report

Variant	rs59945200
Chromosome Location	chr9:116505251-116505252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116504620..116507009-chr9:116507606..116509434,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12003007	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12003025	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12003036	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12005142	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12682750	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12684806	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12684822	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908738	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908750	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908763	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908769	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908826	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908828	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16908855	0.83[EUR][1000 genomes]
rs16908863	0.83[EUR][1000 genomes]
rs56828590	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56929719	0.85[ASN][1000 genomes]
rs59524940	0.85[ASN][1000 genomes]
rs60505560	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60726370	0.85[ASN][1000 genomes]
rs61265469	0.85[ASN][1000 genomes]
rs61421261	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557113	0.87[ASN][1000 genomes]
rs62557114	0.87[ASN][1000 genomes]
rs62557115	0.87[ASN][1000 genomes]
rs62557116	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62557117	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62557118	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557120	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557121	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557122	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557123	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557125	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557126	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557127	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557129	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557134	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62557135	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62558193	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62558194	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7031265	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7045057	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7045864	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7341839	0.87[ASN][1000 genomes]
rs73548453	0.85[ASN][1000 genomes]
rs73548455	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73548463	0.85[ASN][1000 genomes]
rs73548475	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73548490	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116504400-116505600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr9:116504800-116505400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116504800-116505400	Enhancers	Spleen	Spleen
4	chr9:116504800-116505600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:116504800-116505600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:116505000-116505400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:116505000-116505400	Bivalent Enhancer	NHEK	skin
8	chr9:116505000-116506400	Enhancers	Fetal Heart	heart
9	chr9:116505200-116505400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:116505200-116505400	Bivalent Enhancer	NHDF-Ad	bronchial
11	chr9:116505200-116505600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:116505200-116506000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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