Variant report

Variant	rs62557113
Chromosome Location	chr9:116500792-116500793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59945200	0.87[ASN][1000 genomes]
rs62557114	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62557115	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034081	0.89[EUR][1000 genomes]
rs7341836	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7341839	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116482800-116501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116497800-116501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:116499400-116504800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:116500000-116501000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:116500000-116501200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:116500000-116501200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:116500000-116501400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:116500000-116501800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:116500200-116501200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:116500400-116502800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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