Variant report

Variant	rs7341839
Chromosome Location	chr9:116503966-116503967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12003007	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs12003025	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs12003036	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs16908738	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs16908763	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs16908769	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap]
rs59945200	0.87[ASN][1000 genomes]
rs62557113	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62557114	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62557115	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031265	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs7034081	0.90[EUR][1000 genomes]
rs7045057	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs7045864	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7341836	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7341839	DNAJC25	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116499400-116504800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:116501000-116504800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:116501200-116504800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:116501400-116505000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:116501600-116504600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:116502200-116505200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:116502800-116504200	Enhancers	HMEC	breast
8	chr9:116503000-116504000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:116503400-116504000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:116503400-116505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:116503800-116504200	Bivalent Enhancer	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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