Variant report

Variant	rs5997372
Chromosome Location	chr22:28909942-28909943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12157518	0.90[ASN][1000 genomes]
rs12159502	0.88[EUR][1000 genomes]
rs16986290	0.86[ASN][1000 genomes]
rs16986377	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986462	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986548	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35731009	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58427200	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997355	0.81[ASN][1000 genomes]
rs5997363	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997365	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997367	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997369	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005751	0.90[ASN][1000 genomes]
rs6005757	0.81[ASN][1000 genomes]
rs6005758	0.90[ASN][1000 genomes]
rs6005765	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6005779	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005780	0.97[EUR][1000 genomes]
rs6005783	0.97[EUR][1000 genomes]
rs6005789	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005829	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6005833	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005834	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73428082	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73428096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73430108	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28902600-28910600	Weak transcription	Ovary	ovary
2	chr22:28908800-28910400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr22:28908800-28917400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:28909400-28910400	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links