Variant report

Variant rs6005780
Chromosome Location chr22:28807540-28807541
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:28793000-28808200 Weak transcription Aorta Aorta
2 chr22:28793000-28808600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr22:28793000-28814000 Weak transcription Left Ventricle heart
4 chr22:28793000-28819800 Weak transcription Fetal Intestine Small intestine
5 chr22:28798400-28809800 Weak transcription Fetal Lung lung
6 chr22:28798800-28821200 Weak transcription Dnd41 blood
7 chr22:28801000-28810000 Weak transcription Fetal Kidney kidney
8 chr22:28803800-28807600 Weak transcription Fetal Brain Female brain
9 chr22:28804600-28810000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr22:28805000-28808200 Weak transcription Ovary ovary
11 chr22:28805200-28809600 Weak transcription Fetal Stomach stomach
12 chr22:28805200-28810400 Weak transcription Fetal Brain Male brain
13 chr22:28805400-28807600 Weak transcription Brain Cingulate Gyrus brain
14 chr22:28805400-28807600 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr22:28805800-28808000 Weak transcription Psoas Muscle Psoas
16 chr22:28805800-28808800 Enhancers Cortex derived primary cultured neurospheres brain
17 chr22:28806000-28807600 Enhancers Muscle Satellite Cultured Cells --
18 chr22:28806000-28808000 Enhancers Osteobl bone
19 chr22:28806200-28807800 Enhancers Rectal Smooth Muscle rectum
20 chr22:28806200-28813000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr22:28806600-28807600 Enhancers NHDF-Ad bronchial
22 chr22:28806600-28808200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr22:28806600-28809800 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr22:28806600-28809800 Weak transcription HSMMtube muscle
25 chr22:28806600-28810000 Weak transcription NHLF lung
26 chr22:28806800-28807600 Weak transcription Brain Anterior Caudate brain
27 chr22:28806800-28807800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr22:28806800-28808000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr22:28806800-28808200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr22:28806800-28809800 Weak transcription Brain Substantia Nigra brain
31 chr22:28806800-28809800 Weak transcription HUVEC blood vessel
32 chr22:28806800-28810000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr22:28806800-28815400 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr22:28806800-28815800 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr22:28807000-28807800 Enhancers Colon Smooth Muscle Colon
36 chr22:28807200-28807800 Enhancers Adipose Nuclei Adipose
37 chr22:28807200-28808600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr22:28807200-28809800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr22:28807400-28807600 Enhancers Brain Angular Gyrus brain
40 chr22:28807400-28807600 Enhancers Brain Germinal Matrix brain
41 chr22:28807400-28807600 Enhancers Brain Hippocampus Middle brain
42 chr22:28807400-28808400 Enhancers Breast Myoepithelial Primary Cells Breast
43 chr22:28807400-28809600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr22:28807400-28821200 Weak transcription Hela-S3 cervix

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