Variant report

Variant	rs6005793
Chromosome Location	chr22:28914573-28914574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28912407..28915228-chr22:28919764..28921704,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12157518	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12159502	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs16986290	0.86[ASN][1000 genomes]
rs16986377	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986462	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986548	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35731009	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58427200	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997355	0.81[ASN][1000 genomes]
rs5997363	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997365	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997367	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997369	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005751	0.90[ASN][1000 genomes]
rs6005757	0.81[ASN][1000 genomes]
rs6005758	0.90[ASN][1000 genomes]
rs6005765	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6005779	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005780	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6005783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6005789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005829	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6005833	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005834	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73428082	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73428096	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73430108	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28908800-28917400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:28910800-28916600	Weak transcription	Ovary	ovary
3	chr22:28911000-28915400	Weak transcription	Fetal Lung	lung
4	chr22:28911000-28917000	Weak transcription	Adipose Nuclei	Adipose
5	chr22:28911000-28917600	Weak transcription	NHDF-Ad	bronchial
6	chr22:28911600-28915600	Weak transcription	Fetal Brain Female	brain
7	chr22:28913400-28923800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:28914400-28915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links