Variant report

Variant	rs5997831
Chromosome Location	chr22:31383696-31383697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12157617	1.00[AMR][1000 genomes]
rs12159317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12160446	1.00[AFR][1000 genomes]
rs12161052	1.00[AFR][1000 genomes]
rs5994359	1.00[AFR][1000 genomes]
rs5994364	1.00[AMR][1000 genomes]
rs5997826	1.00[AFR][1000 genomes]
rs5997827	1.00[AFR][1000 genomes]
rs5997829	1.00[AFR][1000 genomes]
rs5997832	1.00[AMR][1000 genomes]
rs5997834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31374400-31384000	Weak transcription	HSMMtube	muscle
2	chr22:31381000-31385200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr22:31382400-31384000	Weak transcription	HepG2	liver
4	chr22:31383200-31384400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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