Variant report

Variant	rs5997827
Chromosome Location	chr22:31369848-31369849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31354949..31372607-chr22:31475365..31485377,53	MCF-7	breast:
2	chr22:31358868..31372302-chr22:31474097..31485545,64	MCF-7	breast:
3	chr22:31360911..31371148-chr22:31475052..31483145,24	K562	blood:

Variant related genes	Relation type
ENSG00000273387	Chromatin interaction
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12158241	1.00[AMR][1000 genomes]
rs12158547	1.00[AMR][1000 genomes]
rs12159317	1.00[AFR][1000 genomes]
rs12159387	1.00[AMR][1000 genomes]
rs12160041	1.00[AMR][1000 genomes]
rs12160446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12160613	1.00[AMR][1000 genomes]
rs12161052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13056417	1.00[AMR][1000 genomes]
rs5994354	1.00[AMR][1000 genomes]
rs5994355	1.00[AMR][1000 genomes]
rs5994359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5994361	1.00[AMR][1000 genomes]
rs5997801	1.00[AMR][1000 genomes]
rs5997804	1.00[AMR][1000 genomes]
rs5997805	1.00[AMR][1000 genomes]
rs5997809	1.00[AMR][1000 genomes]
rs5997813	1.00[AMR][1000 genomes]
rs5997814	1.00[AMR][1000 genomes]
rs5997815	1.00[AMR][1000 genomes]
rs5997816	1.00[AMR][1000 genomes]
rs5997817	1.00[AMR][1000 genomes]
rs5997819	1.00[AMR][1000 genomes]
rs5997825	1.00[AMR][1000 genomes]
rs5997826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997828	1.00[AMR][1000 genomes]
rs5997829	1.00[AFR][1000 genomes]
rs5997831	1.00[AFR][1000 genomes]
rs5997834	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31365800-31375200	ZNF genes & repeats	Fetal Brain Male	brain
2	chr22:31366000-31373000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr22:31366000-31373400	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr22:31366200-31370200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
5	chr22:31366200-31372600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
6	chr22:31366200-31373400	ZNF genes & repeats	Fetal Lung	lung
7	chr22:31366200-31375800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31366400-31370000	ZNF genes & repeats	Aorta	Aorta
9	chr22:31366400-31372800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr22:31366400-31373200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr22:31366400-31374000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:31366400-31374200	ZNF genes & repeats	GM12878-XiMat	blood
13	chr22:31366400-31374600	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr22:31366400-31375000	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr22:31366400-31375200	ZNF genes & repeats	Fetal Brain Female	brain
16	chr22:31366400-31376800	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr22:31366600-31372000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr22:31366600-31372000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr22:31366600-31372200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr22:31366600-31372600	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr22:31366600-31374400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr22:31366600-31375200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr22:31366600-31376400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr22:31366800-31371000	Strong transcription	Fetal Thymus	thymus
25	chr22:31366800-31371800	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr22:31366800-31372200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
27	chr22:31366800-31373000	ZNF genes & repeats	Fetal Kidney	kidney
28	chr22:31366800-31380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr22:31367000-31370200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr22:31367000-31370600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr22:31367000-31371800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr22:31367000-31372000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr22:31367000-31372600	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr22:31367000-31373800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr22:31367000-31374400	ZNF genes & repeats	A549	lung
36	chr22:31367000-31374800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr22:31367000-31375200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr22:31367200-31370600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr22:31367200-31370600	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr22:31367200-31371000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr22:31367200-31371200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
42	chr22:31367200-31371600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr22:31367200-31371600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr22:31367200-31371800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
45	chr22:31367200-31372000	ZNF genes & repeats	Brain Hippocampus Middle	brain
46	chr22:31367200-31372800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr22:31367200-31373400	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr22:31367200-31374000	Strong transcription	Osteobl	bone
49	chr22:31367200-31374200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr22:31367200-31376000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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