Variant report

Variant	rs12160446
Chromosome Location	chr22:31379014-31379015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31378759-31379299	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31378137..31380801-chr22:31479552..31482024,3	MCF-7	breast:
2	chr22:31376348..31379301-chr22:31392662..31394474,2	MCF-7	breast:
3	chr22:31378816..31383088-chr22:31474878..31478624,4	MCF-7	breast:
4	chr22:31363809..31367376-chr22:31377892..31382515,6	K562	blood:
5	chr22:31363045..31367376-chr22:31378026..31383463,6	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000269987	TF binding region
ENSG00000133422	Chromatin interaction
ENSG00000253352	Chromatin interaction
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12158241	1.00[AMR][1000 genomes]
rs12158547	1.00[AMR][1000 genomes]
rs12159317	1.00[AFR][1000 genomes]
rs12159387	1.00[AMR][1000 genomes]
rs12160041	1.00[AMR][1000 genomes]
rs12160613	1.00[AMR][1000 genomes]
rs12161052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13056417	1.00[AMR][1000 genomes]
rs5994354	1.00[AMR][1000 genomes]
rs5994355	1.00[AMR][1000 genomes]
rs5994359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5994361	1.00[AMR][1000 genomes]
rs5997801	1.00[AMR][1000 genomes]
rs5997804	1.00[AMR][1000 genomes]
rs5997805	1.00[AMR][1000 genomes]
rs5997809	1.00[AMR][1000 genomes]
rs5997813	1.00[AMR][1000 genomes]
rs5997814	1.00[AMR][1000 genomes]
rs5997815	1.00[AMR][1000 genomes]
rs5997816	1.00[AMR][1000 genomes]
rs5997817	1.00[AMR][1000 genomes]
rs5997819	1.00[AMR][1000 genomes]
rs5997825	1.00[AMR][1000 genomes]
rs5997826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997828	1.00[AMR][1000 genomes]
rs5997829	1.00[AFR][1000 genomes]
rs5997831	1.00[AFR][1000 genomes]
rs5997834	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31366800-31380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:31373000-31381800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr22:31374400-31384000	Weak transcription	HSMMtube	muscle
4	chr22:31374600-31379200	Weak transcription	HSMM	muscle
5	chr22:31376600-31379800	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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