Variant report

Variant	rs59986490
Chromosome Location	chr2:73379288-73379289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10181329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10193012	1.00[AMR][1000 genomes]
rs13401401	1.00[AMR][1000 genomes]
rs13402667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402757	1.00[AMR][1000 genomes]
rs13410865	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418681	1.00[AMR][1000 genomes]
rs13423968	1.00[AMR][1000 genomes]
rs2231438	1.00[AMR][1000 genomes]
rs60314377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61736525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73379000-73379400	Enhancers	HUVEC	blood vessel
2	chr2:73379000-73379600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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