Variant report

Variant	rs61736525
Chromosome Location	chr2:73449001-73449002
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr2:73448839-73449626	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:73448098..73451210-chr2:73461393..73463286,3	MCF-7	breast:
2	chr2:73448558..73450569-chr2:73451862..73453876,2	MCF-7	breast:
3	chr2:73402189..73403780-chr2:73448975..73451788,2	K562	blood:
4	chr2:73440196..73443079-chr2:73443307..73449769,10	MCF-7	breast:

Variant related genes	Relation type
SMYD5	TF binding region
ENSG00000135624	Chromatin interaction
ENSG00000135632	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10181329	1.00[AMR][1000 genomes]
rs10193012	1.00[AMR][1000 genomes]
rs13401401	1.00[AMR][1000 genomes]
rs13402667	1.00[AMR][1000 genomes]
rs13402757	1.00[AMR][1000 genomes]
rs13410865	1.00[AMR][1000 genomes]
rs13418681	1.00[AMR][1000 genomes]
rs13423968	1.00[AMR][1000 genomes]
rs2231438	1.00[AMR][1000 genomes]
rs28730851	1.00[AMR][1000 genomes]
rs59986490	1.00[AMR][1000 genomes]
rs60303012	1.00[AMR][1000 genomes]
rs60314377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2776	chr2:73431854-73482304	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73442000-73453800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:73442200-73453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:73442200-73459600	Weak transcription	Right Atrium	heart
4	chr2:73442400-73451600	Weak transcription	Thymus	Thymus
5	chr2:73442400-73452400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:73442400-73459400	Weak transcription	Fetal Brain Male	brain
7	chr2:73442600-73459600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:73442600-73459600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:73442600-73459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:73442800-73449400	Weak transcription	HUVEC	blood vessel
11	chr2:73442800-73449800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:73442800-73456400	Weak transcription	NH-A	brain
13	chr2:73442800-73459400	Weak transcription	Fetal Heart	heart
14	chr2:73442800-73459400	Weak transcription	Stomach Mucosa	stomach
15	chr2:73442800-73459600	Weak transcription	Small Intestine	intestine
16	chr2:73443000-73450200	Weak transcription	GM12878-XiMat	blood
17	chr2:73443000-73459600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:73444800-73456000	Strong transcription	HepG2	liver
19	chr2:73445000-73457600	Strong transcription	Fetal Intestine Small	intestine
20	chr2:73445200-73456000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:73445400-73450800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:73445400-73453200	Strong transcription	Aorta	Aorta
23	chr2:73445400-73453400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr2:73445400-73454000	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr2:73445400-73455000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:73445400-73455800	Strong transcription	Primary T cells from cord blood	blood
27	chr2:73445400-73456200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:73445400-73457200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:73445400-73457600	Strong transcription	Fetal Stomach	stomach
30	chr2:73445600-73452200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:73445600-73452200	Strong transcription	Right Ventricle	heart
32	chr2:73445600-73453000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:73445600-73454600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr2:73445600-73455600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:73445600-73456200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr2:73445600-73457200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:73445600-73457200	Strong transcription	Dnd41	blood
38	chr2:73445800-73451600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:73445800-73452600	Strong transcription	Lung	lung
40	chr2:73445800-73454200	Strong transcription	Ovary	ovary
41	chr2:73445800-73456000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:73445800-73457200	Strong transcription	Brain Anterior Caudate	brain
43	chr2:73445800-73457200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr2:73445800-73457600	Strong transcription	Fetal Intestine Large	intestine
45	chr2:73445800-73458200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:73446000-73449200	Weak transcription	NHDF-Ad	bronchial
47	chr2:73446000-73451200	Strong transcription	NHLF	lung
48	chr2:73446000-73451400	Strong transcription	Fetal Lung	lung
49	chr2:73446000-73451600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr2:73446000-73452000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links