Variant report

Variant	rs60010006
Chromosome Location	chr2:7395443-7395444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10205823	0.82[ASN][1000 genomes]
rs17628484	0.83[ASN][1000 genomes]
rs17629326	0.82[ASN][1000 genomes]
rs2056635	0.83[ASN][1000 genomes]
rs2059984	0.96[ASN][1000 genomes]
rs4668533	0.82[ASN][1000 genomes]
rs55751069	0.86[ASN][1000 genomes]
rs55900254	0.86[ASN][1000 genomes]
rs58433699	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6720017	0.82[ASN][1000 genomes]
rs6724621	0.82[ASN][1000 genomes]
rs72770059	0.91[ASN][1000 genomes]
rs72770065	0.86[ASN][1000 genomes]
rs7556844	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7599240	0.86[ASN][1000 genomes]
rs7599262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7383200-7399800	Weak transcription	Spleen	Spleen
2	chr2:7389600-7402600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:7395200-7395800	Enhancers	Brain Substantia Nigra	brain
4	chr2:7395400-7395600	Enhancers	Brain Anterior Caudate	brain
5	chr2:7395400-7395800	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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