Variant report

Variant	rs7599240
Chromosome Location	chr2:7396510-7396511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10205823	0.95[ASN][1000 genomes]
rs11898847	0.86[ASN][1000 genomes]
rs17628484	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17629193	0.91[ASN][1000 genomes]
rs17629326	0.95[ASN][1000 genomes]
rs17678724	0.82[CHB][hapmap]
rs17679952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17679999	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2056634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2056635	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2056637	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2059984	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4668533	0.95[ASN][1000 genomes]
rs55751069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55900254	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60010006	0.86[ASN][1000 genomes]
rs62104707	0.80[ASN][1000 genomes]
rs62104708	0.80[ASN][1000 genomes]
rs62104709	0.80[ASN][1000 genomes]
rs62104710	0.80[ASN][1000 genomes]
rs6720017	0.95[ASN][1000 genomes]
rs6724621	0.95[ASN][1000 genomes]
rs72770038	0.80[ASN][1000 genomes]
rs72770045	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72770048	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72770050	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72770051	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72770052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72770055	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72770056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72770057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72770059	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72770065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599262	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7383200-7399800	Weak transcription	Spleen	Spleen
2	chr2:7389600-7402600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:7395600-7396800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:7395600-7403000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:7396000-7397200	Enhancers	Fetal Brain Female	brain
6	chr2:7396000-7399200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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