Variant report
| Variant | rs6724621 |
|---|---|
| Chromosome Location | chr2:7413142-7413143 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10183292 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10197609 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10200485 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10205823 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11898813 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11898847 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1594314 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17629193 | 0.95[ASN][1000 genomes] |
| rs17629326 | 1.00[ASN][1000 genomes] |
| rs17678724 | 0.82[CHB][hapmap] |
| rs17679952 | 0.85[ASN][1000 genomes] |
| rs17679999 | 0.85[ASN][1000 genomes] |
| rs4668533 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55751069 | 0.95[ASN][1000 genomes] |
| rs55900254 | 0.95[ASN][1000 genomes] |
| rs60010006 | 0.82[ASN][1000 genomes] |
| rs6720017 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72770052 | 0.81[ASN][1000 genomes] |
| rs72770055 | 0.81[ASN][1000 genomes] |
| rs72770056 | 0.81[ASN][1000 genomes] |
| rs72770057 | 0.85[ASN][1000 genomes] |
| rs72770065 | 0.95[ASN][1000 genomes] |
| rs7599240 | 0.95[ASN][1000 genomes] |
| rs7599262 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915888 | chr2:7197783-7461967 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv833337 | chr2:7337273-7521146 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006240 | chr2:7408292-7664557 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv535578 | chr2:7408292-7664557 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:7400200-7428600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr2:7404000-7414200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
