Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27926949..27929533-chr10:28007712..28009624,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10829295	0.99[ASN][1000 genomes]
rs11015913	0.91[AMR][1000 genomes]
rs11015914	0.91[AMR][1000 genomes]
rs11015918	0.91[AMR][1000 genomes]
rs11015919	0.99[ASN][1000 genomes]
rs11015920	0.91[AMR][1000 genomes]
rs11015924	0.99[ASN][1000 genomes]
rs11015925	0.93[AMR][1000 genomes]
rs11015933	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219722	0.87[AMR][1000 genomes]
rs1494206	0.91[AMR][1000 genomes]
rs1494207	0.91[AMR][1000 genomes]
rs1494208	0.91[AMR][1000 genomes]
rs1552878	0.99[ASN][1000 genomes]
rs17756469	0.91[AMR][1000 genomes]
rs17756619	0.86[EUR][1000 genomes]
rs17829539	0.91[AMR][1000 genomes]
rs1907383	0.89[AMR][1000 genomes]
rs1908273	0.91[AMR][1000 genomes]
rs1908274	0.91[AMR][1000 genomes]
rs1908275	0.91[AMR][1000 genomes]
rs1908276	0.91[AMR][1000 genomes]
rs3952833	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4749254	0.99[ASN][1000 genomes]
rs4749258	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749259	0.86[EUR][1000 genomes]
rs60633943	0.91[AMR][1000 genomes]
rs60891419	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482635	0.99[ASN][1000 genomes]
rs7082165	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7083092	0.99[ASN][1000 genomes]
rs7475183	0.87[AMR][1000 genomes]
rs7902371	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903134	0.93[AMR][1000 genomes]
rs7920770	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs980135	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27927200-27932200	Weak transcription	Osteobl	bone
2	chr10:27927400-27932000	Weak transcription	HSMMtube	muscle
3	chr10:27927800-27932200	Weak transcription	Adipose Nuclei	Adipose

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