Variant report

Variant	rs10829295
Chromosome Location	chr10:27917124-27917125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27915568..27918420-chr10:27918885..27920818,3	K562	blood:
2	chr10:27906569..27908486-chr10:27915166..27917379,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10829306	0.80[CEU][hapmap]
rs11015919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015924	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015933	1.00[ASN][1000 genomes]
rs12260084	0.84[EUR][1000 genomes]
rs1552878	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756619	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs17756631	0.80[CEU][hapmap]
rs3952833	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405204	0.80[CEU][hapmap]
rs4749254	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749258	0.97[ASN][1000 genomes]
rs60014356	0.99[ASN][1000 genomes]
rs60891419	1.00[ASN][1000 genomes]
rs6482635	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069754	0.81[EUR][1000 genomes]
rs7076663	0.84[EUR][1000 genomes]
rs7082165	0.95[ASN][1000 genomes]
rs7083092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092214	0.84[EUR][1000 genomes]
rs7100202	0.80[EUR][1000 genomes]
rs72629769	0.80[EUR][1000 genomes]
rs7902371	0.94[ASN][1000 genomes]
rs7908497	0.84[EUR][1000 genomes]
rs7920770	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804393	0.80[EUR][1000 genomes]
rs9804407	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829295	MKX	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27910800-27923000	Weak transcription	Aorta	Aorta
2	chr10:27913600-27917800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:27914800-27917200	Weak transcription	Fetal Stomach	stomach
4	chr10:27914800-27917200	Weak transcription	Osteobl	bone
5	chr10:27914800-27917600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:27914800-27918000	Enhancers	NHDF-Ad	bronchial
7	chr10:27915000-27926200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:27916000-27917800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:27916200-27918400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:27916600-27917200	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:27917000-27917200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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