Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10829295	0.81[EUR][1000 genomes]
rs10829306	0.80[CEU][hapmap]
rs11015919	0.81[EUR][1000 genomes]
rs11015924	0.81[EUR][1000 genomes]
rs12260084	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1552878	0.81[EUR][1000 genomes]
rs17756619	0.80[CEU][hapmap]
rs17756631	0.80[CEU][hapmap]
rs2934709	0.82[ASN][1000 genomes]
rs3952833	0.83[EUR][1000 genomes]
rs4405204	0.80[CEU][hapmap]
rs4749254	0.84[EUR][1000 genomes]
rs7076663	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089354	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7092214	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100202	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629769	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893641	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908497	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920770	0.84[EUR][1000 genomes]
rs9804393	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9804407	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7069754	MKX	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27933800-27963600	Weak transcription	Ovary	ovary
2	chr10:27941600-27963600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27944400-27948600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:27945600-27948600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:27945600-27948600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:27946000-27948600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:27947000-27949200	Weak transcription	Right Atrium	heart
8	chr10:27947000-27951000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:27947200-27951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:27947400-27949400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:27947800-27948400	Enhancers	NHDF-Ad	bronchial
12	chr10:27947800-27950400	Enhancers	Osteobl	bone
13	chr10:27947800-27950800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:27948000-27948400	Enhancers	HMEC	breast
15	chr10:27948000-27948600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:27948000-27949000	Enhancers	HSMM	muscle
17	chr10:27948000-27949200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:27948200-27949600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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