Variant report
Variant | rs1552878 |
---|---|
Chromosome Location | chr10:27924748-27924749 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10829295 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10829306 | 0.80[CEU][hapmap] |
rs11015919 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11015924 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11015933 | 1.00[ASN][1000 genomes] |
rs12260084 | 0.84[EUR][1000 genomes] |
rs17756619 | 0.80[CEU][hapmap] |
rs17756631 | 0.80[CEU][hapmap] |
rs3952833 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4405204 | 0.80[CEU][hapmap] |
rs4749254 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4749258 | 0.97[ASN][1000 genomes] |
rs60014356 | 0.99[ASN][1000 genomes] |
rs60891419 | 1.00[ASN][1000 genomes] |
rs6482635 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7069754 | 0.81[EUR][1000 genomes] |
rs7076663 | 0.84[EUR][1000 genomes] |
rs7082165 | 0.95[ASN][1000 genomes] |
rs7083092 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7092214 | 0.84[EUR][1000 genomes] |
rs7100202 | 0.80[EUR][1000 genomes] |
rs72629769 | 0.80[EUR][1000 genomes] |
rs7902371 | 0.94[ASN][1000 genomes] |
rs7908497 | 0.84[EUR][1000 genomes] |
rs7920770 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9804393 | 0.80[EUR][1000 genomes] |
rs9804407 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv550241 | chr10:27569521-28025771 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
2 | nsv1045257 | chr10:27572440-27926946 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
3 | esv3368825 | chr10:27864181-28043820 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
4 | nsv894985 | chr10:27869503-27957785 | Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv894986 | chr10:27904646-27957785 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:27915000-27926200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
2 | chr10:27923800-27925000 | Enhancers | Stomach Mucosa | stomach |
3 | chr10:27924600-27925000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |