Variant report

Variant	rs60034868
Chromosome Location	chr8:20205091-20205092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12679126	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12680904	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092261	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092264	0.85[ASN][1000 genomes]
rs17092273	0.90[AFR][1000 genomes]
rs17092302	0.80[AMR][1000 genomes]
rs17092307	0.80[AMR][1000 genomes]
rs17092342	0.80[AMR][1000 genomes]
rs17092343	0.80[AMR][1000 genomes]
rs2086882	0.82[ASN][1000 genomes]
rs2086883	0.82[ASN][1000 genomes]
rs57266128	0.80[AMR][1000 genomes]
rs59651278	0.80[AMR][1000 genomes]
rs6989224	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20201200-20206400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:20202000-20205600	Weak transcription	Placenta	Placenta
3	chr8:20202800-20206200	Weak transcription	Fetal Heart	heart
4	chr8:20204000-20206800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:20204800-20206000	Weak transcription	Right Atrium	heart
6	chr8:20205000-20207800	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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