Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12678584	0.90[ASN][1000 genomes]
rs12679126	0.89[ASN][1000 genomes]
rs12679606	0.86[AMR][1000 genomes]
rs12681762	0.86[AMR][1000 genomes]
rs17092264	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17092273	0.94[ASN][1000 genomes]
rs17092286	0.86[ASN][1000 genomes]
rs17092289	0.85[ASN][1000 genomes]
rs17092313	0.86[AMR][1000 genomes]
rs17092316	0.86[AMR][1000 genomes]
rs17092317	0.86[AMR][1000 genomes]
rs17092318	0.86[AMR][1000 genomes]
rs17092321	0.86[AMR][1000 genomes]
rs17092324	0.86[AMR][1000 genomes]
rs17092331	0.86[AMR][1000 genomes]
rs17092333	0.86[AMR][1000 genomes]
rs2086883	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60034868	0.82[ASN][1000 genomes]
rs60236973	0.86[AMR][1000 genomes]
rs6989224	0.94[ASN][1000 genomes]
rs7825428	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7838039	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20212600-20217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:20215600-20218400	Enhancers	Fetal Brain Female	brain
3	chr8:20215600-20219600	Enhancers	Fetal Brain Male	brain
4	chr8:20216000-20217200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:20216400-20218600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: