Variant report

Variant	rs7838039
Chromosome Location	chr8:20221728-20221729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12674725	1.00[EUR][1000 genomes]
rs12676527	1.00[EUR][1000 genomes]
rs12677988	1.00[EUR][1000 genomes]
rs12678584	0.96[ASN][1000 genomes]
rs12679126	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679606	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12681762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092264	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17092273	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092286	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17092289	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17092302	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092313	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092316	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092317	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092318	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092321	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092324	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092333	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092342	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092343	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086882	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2086883	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57266128	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59651278	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60236973	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989224	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825428	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20217600-20226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:20219600-20226400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:20219800-20226400	Weak transcription	HSMMtube	muscle
4	chr8:20220400-20221800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:20221000-20221800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:20221200-20222000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:20221400-20222200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:20221600-20221800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:20221600-20222000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:20221600-20222000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:20221600-20222200	Enhancers	HUES6 Cell Line	embryonic stem cell

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