Variant report

Variant	rs17092273
Chromosome Location	chr8:20219519-20219520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12674725	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12676527	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12677988	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12678393	0.92[AMR][1000 genomes]
rs12678584	0.96[ASN][1000 genomes]
rs12679126	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679606	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12680904	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12681762	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092261	0.85[AFR][1000 genomes]
rs17092264	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17092286	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17092289	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17092302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092307	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092313	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092316	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092317	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092318	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092321	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092324	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092331	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092333	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092335	0.92[AMR][1000 genomes]
rs17092342	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086882	0.94[ASN][1000 genomes]
rs2086883	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57266128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59651278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60034868	0.90[AFR][1000 genomes]
rs60236973	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825428	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7838039	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20215600-20219600	Enhancers	Fetal Brain Male	brain
2	chr8:20217600-20226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:20218200-20219800	Enhancers	Fetal Muscle Leg	muscle
4	chr8:20218400-20219600	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:20218600-20219600	Enhancers	Fetal Stomach	stomach
6	chr8:20218600-20219800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:20218800-20219600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:20218800-20219600	Enhancers	Brain Germinal Matrix	brain
9	chr8:20218800-20219800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:20219000-20219600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:20219000-20219600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:20219000-20219600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:20219000-20219600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:20219000-20219600	Flanking Active TSS	HSMMtube	muscle
15	chr8:20219200-20219600	Enhancers	Fetal Brain Female	brain
16	chr8:20219200-20219800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:20219400-20219600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:20219400-20219600	Flanking Active TSS	HSMM	muscle

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