Variant report
| Variant | rs60037800 |
|---|---|
| Chromosome Location | chr14:70744812-70744813 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs17108067 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35051921 | 0.83[EUR][1000 genomes] |
| rs55754533 | 0.83[EUR][1000 genomes] |
| rs55997073 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56258216 | 0.83[EUR][1000 genomes] |
| rs56979041 | 0.83[EUR][1000 genomes] |
| rs58148118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7141890 | 0.83[EUR][1000 genomes] |
| rs74062883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062886 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062887 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062891 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062892 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062894 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062895 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74062897 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74065319 | 0.83[EUR][1000 genomes] |
| rs74065320 | 0.83[EUR][1000 genomes] |
| rs74065324 | 0.83[EUR][1000 genomes] |
| rs74065325 | 0.83[EUR][1000 genomes] |
| rs74065327 | 0.83[EUR][1000 genomes] |
| rs74065328 | 0.83[EUR][1000 genomes] |
| rs74065329 | 0.83[EUR][1000 genomes] |
| rs74065332 | 0.83[EUR][1000 genomes] |
| rs74065333 | 0.83[EUR][1000 genomes] |
| rs74065334 | 0.83[EUR][1000 genomes] |
| rs74065335 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70735800-70749200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr14:70744200-70746800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
