Variant report

Variant	rs74065324
Chromosome Location	chr14:70837578-70837579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70824438..70828087-chr14:70835915..70840761,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133983	Chromatin interaction
ENSG00000222640	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17108067	0.83[EUR][1000 genomes]
rs35051921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55754533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56979041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57900246	1.00[AMR][1000 genomes]
rs58148118	0.83[EUR][1000 genomes]
rs60037800	0.83[EUR][1000 genomes]
rs61008071	1.00[AMR][1000 genomes]
rs61977511	0.82[AFR][1000 genomes]
rs7141890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74062883	0.83[EUR][1000 genomes]
rs74062886	0.83[EUR][1000 genomes]
rs74062887	0.83[EUR][1000 genomes]
rs74062891	0.83[EUR][1000 genomes]
rs74062892	0.83[EUR][1000 genomes]
rs74062893	0.83[EUR][1000 genomes]
rs74062894	0.83[EUR][1000 genomes]
rs74062895	0.83[EUR][1000 genomes]
rs74062897	0.83[EUR][1000 genomes]
rs74065305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74065319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70826600-70839600	Weak transcription	Gastric	stomach
2	chr14:70826800-70839600	Weak transcription	Spleen	Spleen
3	chr14:70826800-70842000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:70826800-70857600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:70827000-70838000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:70827000-70838000	Weak transcription	Ovary	ovary
7	chr14:70827000-70838200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:70827000-70838400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr14:70827000-70839200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:70827000-70839200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:70827000-70839400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:70827000-70839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:70827000-70839600	Weak transcription	Pancreas	Pancrea
14	chr14:70827000-70840000	Weak transcription	Psoas Muscle	Psoas
15	chr14:70827000-70842200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:70827000-70855200	Weak transcription	Esophagus	oesophagus
17	chr14:70827000-70857600	Weak transcription	Small Intestine	intestine
18	chr14:70827000-70864200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:70827200-70838000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:70827200-70839200	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:70827200-70839400	Weak transcription	Osteobl	bone
22	chr14:70827200-70839600	Weak transcription	Aorta	Aorta
23	chr14:70827200-70839600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:70827200-70840800	Weak transcription	Fetal Brain Male	brain
25	chr14:70827200-70842000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:70827200-70864200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:70827200-70864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:70827200-70882600	Weak transcription	A549	lung
29	chr14:70827200-70882600	Weak transcription	NH-A	brain
30	chr14:70827400-70837600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:70827400-70839000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:70827400-70839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:70827400-70839400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:70827400-70839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:70827400-70839600	Weak transcription	Dnd41	blood
36	chr14:70827400-70839800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:70827400-70839800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:70827400-70845800	Weak transcription	HSMM	muscle
39	chr14:70827400-70846200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:70827600-70840600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr14:70831200-70838200	Weak transcription	Fetal Lung	lung
42	chr14:70831600-70841800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:70832000-70872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:70832200-70864200	Weak transcription	GM12878-XiMat	blood
45	chr14:70832600-70858000	Weak transcription	Stomach Mucosa	stomach
46	chr14:70832800-70856600	Weak transcription	HUVEC	blood vessel
47	chr14:70833000-70838000	Weak transcription	Fetal Stomach	stomach
48	chr14:70833000-70839600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:70833600-70838200	Weak transcription	Fetal Intestine Small	intestine
50	chr14:70833800-70839600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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