Variant report

Variant	rs74065320
Chromosome Location	chr14:70831485-70831486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70830251..70832228-chr14:70881567..70883391,2	MCF-7	breast:
2	chr14:70823723..70828065-chr14:70831257..70834061,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133983	Chromatin interaction
ENSG00000222640	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17108067	0.83[EUR][1000 genomes]
rs35051921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55754533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56979041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57900246	1.00[AMR][1000 genomes]
rs58148118	0.83[EUR][1000 genomes]
rs60037800	0.83[EUR][1000 genomes]
rs61008071	1.00[AMR][1000 genomes]
rs61977511	0.82[AFR][1000 genomes]
rs7141890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74062883	0.83[EUR][1000 genomes]
rs74062886	0.83[EUR][1000 genomes]
rs74062887	0.83[EUR][1000 genomes]
rs74062891	0.83[EUR][1000 genomes]
rs74062892	0.83[EUR][1000 genomes]
rs74062893	0.83[EUR][1000 genomes]
rs74062894	0.83[EUR][1000 genomes]
rs74062895	0.83[EUR][1000 genomes]
rs74062897	0.83[EUR][1000 genomes]
rs74065305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74065319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70826600-70839600	Weak transcription	Gastric	stomach
2	chr14:70826800-70839600	Weak transcription	Spleen	Spleen
3	chr14:70826800-70842000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:70826800-70857600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:70827000-70833800	Weak transcription	HepG2	liver
6	chr14:70827000-70836800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:70827000-70837000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:70827000-70837000	Weak transcription	Left Ventricle	heart
9	chr14:70827000-70837200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:70827000-70837200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:70827000-70837200	Weak transcription	HMEC	breast
12	chr14:70827000-70837200	Weak transcription	HSMMtube	muscle
13	chr14:70827000-70837400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:70827000-70837400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr14:70827000-70838000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:70827000-70838000	Weak transcription	Ovary	ovary
17	chr14:70827000-70838200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:70827000-70838400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:70827000-70839200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:70827000-70839200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:70827000-70839400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:70827000-70839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:70827000-70839600	Weak transcription	Pancreas	Pancrea
24	chr14:70827000-70840000	Weak transcription	Psoas Muscle	Psoas
25	chr14:70827000-70842200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:70827000-70855200	Weak transcription	Esophagus	oesophagus
27	chr14:70827000-70857600	Weak transcription	Small Intestine	intestine
28	chr14:70827000-70864200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:70827200-70832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:70827200-70836800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr14:70827200-70837000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:70827200-70837000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:70827200-70837000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr14:70827200-70837000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:70827200-70837000	Weak transcription	Adipose Nuclei	Adipose
36	chr14:70827200-70837000	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:70827200-70837000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:70827200-70837000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:70827200-70837000	Weak transcription	Right Ventricle	heart
40	chr14:70827200-70837200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:70827200-70838000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:70827200-70839200	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:70827200-70839400	Weak transcription	Osteobl	bone
44	chr14:70827200-70839600	Weak transcription	Aorta	Aorta
45	chr14:70827200-70839600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:70827200-70840800	Weak transcription	Fetal Brain Male	brain
47	chr14:70827200-70842000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr14:70827200-70864200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:70827200-70864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:70827200-70882600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links