Variant report

Variant	rs60104847
Chromosome Location	chr12:39443276-39443277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17126955	1.00[EUR][1000 genomes]
rs17126959	1.00[EUR][1000 genomes]
rs56091726	1.00[EUR][1000 genomes]
rs56352410	1.00[EUR][1000 genomes]
rs61204473	1.00[EUR][1000 genomes]
rs73262407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73262445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73262463	1.00[EUR][1000 genomes]
rs73264529	1.00[EUR][1000 genomes]
rs73264532	1.00[EUR][1000 genomes]
rs73274747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274761	1.00[EUR][1000 genomes]
rs73274764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39437200-39452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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