Variant report

Variant	rs17126955
Chromosome Location	chr12:39551886-39551887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10506137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17120051	1.00[EUR][1000 genomes]
rs17126959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17126974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17126978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17126995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4479030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352410	1.00[EUR][1000 genomes]
rs60104847	1.00[EUR][1000 genomes]
rs61204473	1.00[EUR][1000 genomes]
rs73262407	1.00[EUR][1000 genomes]
rs73262445	1.00[EUR][1000 genomes]
rs73262463	1.00[EUR][1000 genomes]
rs73264529	1.00[EUR][1000 genomes]
rs73264532	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832374	chr12:39468434-39630369	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899010	chr12:39512724-39594506	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899011	chr12:39517706-39594506	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv899012	chr12:39531466-39594506	Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17126955	LCK	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39551800-39552000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:39551800-39552400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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