Variant report

Variant	rs61204473
Chromosome Location	chr12:39457281-39457282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17126955	1.00[EUR][1000 genomes]
rs17126959	1.00[EUR][1000 genomes]
rs17126974	1.00[EUR][1000 genomes]
rs17126978	1.00[EUR][1000 genomes]
rs56352410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60104847	1.00[EUR][1000 genomes]
rs73262407	1.00[EUR][1000 genomes]
rs73262445	1.00[EUR][1000 genomes]
rs73262463	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274764	1.00[EUR][1000 genomes]
rs73274767	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39455400-39463000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:39457000-39459000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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