Variant report

Variant	rs60118133
Chromosome Location	chr11:26112194-26112195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs60444535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60804007	1.00[AMR][1000 genomes]
rs61142566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429405	1.00[AMR][1000 genomes]
rs73433493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435421	1.00[AMR][1000 genomes]
rs73435469	1.00[AMR][1000 genomes]
rs73435470	1.00[AMR][1000 genomes]
rs73435474	1.00[AMR][1000 genomes]
rs73435493	1.00[AMR][1000 genomes]
rs73435497	1.00[AMR][1000 genomes]
rs73435500	1.00[AMR][1000 genomes]
rs73437503	1.00[AMR][1000 genomes]
rs73437513	1.00[AMR][1000 genomes]
rs73437515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437521	1.00[AMR][1000 genomes]
rs73437543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26110400-26112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26110800-26112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26111200-26115400	Weak transcription	Primary B cells from cord blood	blood
5	chr11:26111800-26114800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:26112000-26113600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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