Variant report

Variant	rs73433493
Chromosome Location	chr11:26101841-26101842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs60118133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60804007	1.00[AMR][1000 genomes]
rs61142566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429405	1.00[AMR][1000 genomes]
rs73435421	1.00[AMR][1000 genomes]
rs73435469	1.00[AMR][1000 genomes]
rs73435470	1.00[AMR][1000 genomes]
rs73435474	1.00[AMR][1000 genomes]
rs73435493	1.00[AMR][1000 genomes]
rs73435497	1.00[AMR][1000 genomes]
rs73435500	1.00[AMR][1000 genomes]
rs73437503	1.00[AMR][1000 genomes]
rs73437513	1.00[AMR][1000 genomes]
rs73437515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437521	1.00[AMR][1000 genomes]
rs73437543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26096600-26102000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26100400-26102200	Enhancers	NHEK	skin
3	chr11:26100400-26102400	Enhancers	Hela-S3	cervix
4	chr11:26101200-26102400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:26101400-26102200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:26101600-26102000	Enhancers	Fetal Kidney	kidney
9	chr11:26101800-26103200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links