Variant report

Variant	rs60131780
Chromosome Location	chr3:111571317-111571318
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1282972	0.92[ASN][1000 genomes]
rs6789392	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7652419	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111566000-111571400	Weak transcription	Fetal Heart	heart
4	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:111567800-111577400	Weak transcription	Liver	Liver
6	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
7	chr3:111568000-111571400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:111569400-111571800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:111569600-111572200	Enhancers	Osteobl	bone
10	chr3:111570000-111571600	Enhancers	HMEC	breast
11	chr3:111570000-111571600	Enhancers	NHLF	lung
12	chr3:111570000-111572000	Enhancers	NHEK	skin
13	chr3:111570000-111572200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:111570000-111572400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:111570200-111571600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:111570200-111571800	Enhancers	Adipose Nuclei	Adipose
17	chr3:111570200-111572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:111570200-111572600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:111570200-111574400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:111570400-111571800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:111570400-111571800	Enhancers	Primary T cells from cord blood	blood
22	chr3:111570400-111571800	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:111570400-111577600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:111570600-111571400	Enhancers	Stomach Smooth Muscle	stomach
25	chr3:111570600-111571600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr3:111570600-111571800	Enhancers	NH-A	brain
27	chr3:111570600-111572800	Enhancers	Fetal Intestine Small	intestine
28	chr3:111570600-111572800	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:111570600-111575400	Weak transcription	Small Intestine	intestine
30	chr3:111570800-111571400	Weak transcription	HSMM	muscle
31	chr3:111570800-111571800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:111570800-111572600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:111570800-111575800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:111570800-111577400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:111571000-111571400	Weak transcription	Right Ventricle	heart
36	chr3:111571000-111571400	Enhancers	HUVEC	blood vessel
37	chr3:111571000-111571600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:111571000-111571800	Weak transcription	Fetal Kidney	kidney
39	chr3:111571000-111571800	Enhancers	Hela-S3	cervix
40	chr3:111571000-111574000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr3:111571000-111577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:111571200-111571600	Weak transcription	A549	lung
43	chr3:111571200-111571800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr3:111571200-111571800	Enhancers	Stomach Mucosa	stomach
45	chr3:111571200-111572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:111571200-111572400	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:111571200-111573000	Weak transcription	Placenta	Placenta
48	chr3:111571200-111575000	Enhancers	Fetal Intestine Large	intestine
49	chr3:111571200-111577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:111571200-111577400	Weak transcription	Muscle Satellite Cultured Cells	--

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