Variant report

Variant	rs6789392
Chromosome Location	chr3:111564468-111564469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10934111	1.00[CEU][hapmap]
rs11917956	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1282972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs57913981	0.84[EUR][1000 genomes]
rs60131780	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6785777	1.00[CEU][hapmap]
rs7652419	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111557400-111564800	Weak transcription	Liver	Liver
4	chr3:111559600-111567400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:111559800-111567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:111563000-111577400	Weak transcription	HepG2	liver
7	chr3:111563600-111568400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:111563800-111571200	Weak transcription	Stomach Mucosa	stomach
9	chr3:111564400-111565400	Enhancers	NHLF	lung
10	chr3:111564400-111565600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:111564400-111567800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:111564400-111568400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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