Variant report

Variant	rs7652419
Chromosome Location	chr3:111575604-111575605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:111575393-111575675	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:111575342-111575707	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr3:111575308-111575698	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:111575373-111575662	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr3:111575418-111575663	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr3:111575402-111575666	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr3:111575380-111575785	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr3:111575374-111575656	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr3:111575359-111575690	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1282972	0.97[ASN][1000 genomes]
rs60131780	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6789392	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:111567800-111577400	Weak transcription	Liver	Liver
5	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
6	chr3:111570400-111577600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:111570800-111575800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111570800-111577400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:111571000-111577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:111571200-111577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:111571200-111577400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:111571600-111577400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:111571600-111577400	Weak transcription	HMEC	breast
14	chr3:111571600-111577400	Weak transcription	HSMM	muscle
15	chr3:111571600-111577400	Weak transcription	NHLF	lung
16	chr3:111571800-111576400	Weak transcription	NH-A	brain
17	chr3:111571800-111577200	Weak transcription	Hela-S3	cervix
18	chr3:111571800-111577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:111571800-111577400	Weak transcription	A549	lung
20	chr3:111572200-111577400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:111572200-111577400	Weak transcription	Osteobl	bone
22	chr3:111572400-111575800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:111572400-111577400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:111572400-111577400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:111572400-111577400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:111572400-111577600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:111572400-111577600	Weak transcription	Fetal Kidney	kidney
28	chr3:111572600-111577400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:111572600-111577400	Weak transcription	HUVEC	blood vessel
30	chr3:111572800-111577400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:111574000-111577400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:111574200-111577400	Weak transcription	Spleen	Spleen
33	chr3:111574400-111577400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:111574400-111577400	Weak transcription	Fetal Heart	heart
35	chr3:111574400-111577400	Weak transcription	Fetal Intestine Small	intestine
36	chr3:111574600-111575800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr3:111574800-111576000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr3:111575000-111575800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:111575000-111576000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:111575000-111576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr3:111575000-111577600	Weak transcription	Fetal Intestine Large	intestine
42	chr3:111575400-111575800	Enhancers	Colon Smooth Muscle	Colon
43	chr3:111575400-111576000	Enhancers	Adipose Nuclei	Adipose
44	chr3:111575600-111575800	Weak transcription	Small Intestine	intestine
45	chr3:111575600-111576000	Weak transcription	Right Ventricle	heart
46	chr3:111575600-111576200	Enhancers	Placenta	Placenta
47	chr3:111575600-111577400	Weak transcription	NHEK	skin

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